PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020979-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 241aa    MW: 26597.2 Da    PI: 4.5511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020979-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-162576155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  WALNUT_00020979-RA 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 76
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-182586IPR016177DNA-binding domain
CDDcd000183.48E-252586No hitNo description
PfamPF008473.0E-122576IPR001471AP2/ERF domain
SMARTSM003801.2E-242690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-182685IPR001471AP2/ERF domain
PROSITE profilePS5103218.3342684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEGQSKEEYI GALRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  60
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLRPPNNQFD SLTNPNDLQS NLNCAFDLLE  120
TPNPDPELGL SFLSNQTSSS TTASDTTLAP PVLGNGASST SSALELLLQS SKFKEMLERT  180
SSVADSPPTP QESDQPRRSF PDDIQTYFDC QDSGSYADGD DIIFGDLNSI ASPIFDVELG  240
H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067459.11e-110PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN44e-68AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB9RGP71e-108B9RGP7_RICCO; AP2-type transcription factor
STRINGPOPTR_0003s18350.11e-107(Populus trichocarpa)
STRINGPGSC0003DMT4000367071e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.22e-61ARIA-interacting double AP2 domain protein